species:   Scscl
pid:       PID1752
parent:    Ssc-milR-228
paralog:   
locus:     NW_001820832.1:432472-432537
matures:   ['UGGAGAUGAUGGAACCUCGA', 'GAUCCAUCGCCCAUA']
srr:       SRR12527895
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram NW_001820832.1:432472-432537

12 out of bounds
8 alignments
3 proper strand
3 stranded perfect matches

*********************                            *****************
UUGGAGAUGAUGGAACCUCGACUUGAGCAAGGAGAGACCUGUUUGCAAGUAGAUCCAUCGCCCAUA
.(((.(.(((((((...((.((((..(((((.((....)).))))))))).)))))))))))))..
-UGGAGAUGAUGGAACCUCGA--------------------------------------------- l=20 a=1 c
---------------------------------------------------GAUCCAUCGCCCAUA l=15 a=0 c*
-UGGAGAUGAUGGAACCUCGA--------------------------------------------- l=20 a=1 ma
---------------------------------------------------GAUCCAUCGCCCAUA l=15 a=0 ma*

-UGGAGAUGAUGGAACCUCGA--------------------------------------------- l=20 a=1 (c,ma)
-UGGAGAUGAUGGAACCUCGACUU------------------------------------------ l=23 a=1 
----------UGGAACCUCGACUUGAGCAAGG---------------------------------- l=22 a=1 

mb-01011
ax-1011011
ku-01
ss-110110011000
fn-001
